Ah, you did, my mistake. It's probably not the best idea to publish account
information and passwords on a public mailing list. I would suggest
changing your password in case its compromised by unauthorized users.
--Jaosn
On Sat, Apr 2, 2011 at 4:01 PM, Jason Swails <jason.swails.gmail.com> wrote:
> You should continue to send these to the amber list, since I'm not the most
> experienced with these scripts.
>
> All the best,
> Jason
>
> On Sat, Apr 2, 2011 at 3:44 PM, Mahmoud Soliman <mahmoudelkot.gmail.com>wrote:
>
>>
>> Dear Jason,
>> Sorry to bother you a bit more. I set the Path to AMBERHOME right (in
>> .bashrc) and the job seems to start running but stopped with this error
>> File MAKE_CRD is not found
>> I you do not mind can you log on my account (details below)
>> ssh [1]msoliman.sun.chpc.ac.za
>> password pass1234
>> My job scripts and files are in the following directory
>> /scratch/Amber/glycosidase_work/binding_energies/wild/pbsa
>> We installed Amber in this directory and this should be AMBERHOME
>> Amber directory is (if you cd the following directory)
>> /export/home/nmonama/amber/
>> I would be much appreciated if you can figure out this problem
>> Best wishes
>> Mahmoud
>> On 4/2/11 9:01 PM, Jason Swails wrote:
>>
>> echo $AMBERHOME
>>
>> --
>>
>> *************************************************
>>
>> Mahmoud E. Soliman
>>
>> Computational Chemistry & Modeling (PhD)
>>
>> Department of Chemistry
>>
>> University of Bath
>>
>> Bath
>>
>> BA2 7AY
>>
>> United Kingdom
>>
>> [2]http://people.bath.ac.uk/mess20/
>>
>> [3]http://www.bath.ac.uk/person/812559
>>
>>
>> *********************************************
>>
>> Mahmoud E. Soliman
>>
>> Lecturer of pharmaceutical organic chemistry
>>
>> Pharmaceutical Organic Chemistry Dept.
>>
>> Faculty of pharmacy
>>
>> Zagazig University
>>
>> Zagazig
>>
>> Egypt
>>
>> **********************************************
>>
>> Email:
>>
>> [4]mess20.bath.ac.uk
>>
>> [5]meelkot.zu.edu.eg
>>
>> [6]mahmoudelkot.gmail.com
>>
>> References
>>
>> 1. mailto:msoliman.sun.chpc.ac.za
>> 2. http://people.bath.ac.uk/mess20/
>> 3. http://www.bath.ac.uk/person/812559
>> 4. mailto:mess20.bath.ac.uk
>> 5. mailto:meelkot.zu.edu.eg
>> 6. mailto:mahmoudelkot.gmail.com
>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
>>
>
>
>
> --
> Jason M. Swails
> Quantum Theory Project,
> University of Florida
> Ph.D. Candidate
> 352-392-4032
>
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
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Received on Sat Apr 02 2011 - 16:30:03 PDT
