Dear Amber Users,
I have a basic doubt in ptraj rmsd calculation.
1. when we are giving mask residues for rmsd calculation, whether it
superimposes excluding the mask residues and find rmsd of that mask region?
2. If not is there a way to do that in ptraj?
I found MMTSB has this option. But i wanted to know in ptraj is there a way?
Thank you.
Rajeswari. A
Research Scholar,
Computational Biophysics lab,
IIT Madras,
Chennai, India
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Received on Fri Apr 01 2011 - 00:30:02 PDT
