Hello!
You can use Swiss-PdbViewer program (that is free of charge) to add
missing residues to input PDB.
On Thu, Mar 31, 2011 at 5:57 PM, setyanto md <stwahyudi.md.gmail.com> wrote:
> Dear Amber Developer & User,
>
> I have pdb file from lipase but this file is not complete. There were should
> 388 residue but only 387 residue appear.
> The missing residue is ALA (alanine) and it is at First residue or
> N-terminal.
>
> My friends told me that this missing residue can be neglected because
> located on surface , not in body of protein, This statement is right or not
> ?
>
> But, I lack of confidence if my simulation have missing residue even only
> one residue. So I'll try to add it.
>
> I read in LEAP chapter, but I still cannot understand how to use it.
>
> Would you like to help me how to add missing residue ? Is there any free
> program to add missing residue ?
>
> Thank you very much.
>
> best regards
>
> Setyanto
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>
--
Dmitry Nilov,
Faculty of Bioengineering and Bioinformatics,
Lomonosov Moscow State University
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Received on Thu Mar 31 2011 - 07:30:02 PDT
