Dear Dmitry
Thanks for your suggestions. I'll try first.
regards
setyanto
On Thu, Mar 31, 2011 at 9:09 PM, Dmitry Nilov <nilovdm.gmail.com> wrote:
> Hello!
> You can use Swiss-PdbViewer program (that is free of charge) to add
> missing residues to input PDB.
>
> On Thu, Mar 31, 2011 at 5:57 PM, setyanto md <stwahyudi.md.gmail.com>
> wrote:
> > Dear Amber Developer & User,
> >
> > I have pdb file from lipase but this file is not complete. There were
> should
> > 388 residue but only 387 residue appear.
> > The missing residue is ALA (alanine) and it is at First residue or
> > N-terminal.
> >
> > My friends told me that this missing residue can be neglected because
> > located on surface , not in body of protein, This statement is right or
> not
> > ?
> >
> > But, I lack of confidence if my simulation have missing residue even only
> > one residue. So I'll try to add it.
> >
> > I read in LEAP chapter, but I still cannot understand how to use it.
> >
> > Would you like to help me how to add missing residue ? Is there any free
> > program to add missing residue ?
> >
> > Thank you very much.
> >
> > best regards
> >
> > Setyanto
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
>
>
>
> --
> Dmitry Nilov,
> Faculty of Bioengineering and Bioinformatics,
> Lomonosov Moscow State University
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu Mar 31 2011 - 07:30:03 PDT
