[AMBER] Add Residue at N-terminal

From: setyanto md <stwahyudi.md.gmail.com>
Date: Thu, 31 Mar 2011 20:57:17 +0700

Dear Amber Developer & User,

I have pdb file from lipase but this file is not complete. There were should
388 residue but only 387 residue appear.
The missing residue is ALA (alanine) and it is at First residue or

My friends told me that this missing residue can be neglected because
located on surface , not in body of protein, This statement is right or not

But, I lack of confidence if my simulation have missing residue even only
one residue. So I'll try to add it.

I read in LEAP chapter, but I still cannot understand how to use it.

Would you like to help me how to add missing residue ? Is there any free
program to add missing residue ?

Thank you very much.

best regards

AMBER mailing list
Received on Thu Mar 31 2011 - 07:00:04 PDT
Custom Search