Hi
I am monitoring my remd simulation where I have used exponential
scaling of the temperatures. I do not think I have gain detailed
balance in my system for the acceptance probabilities. From the
rem.log file I am count the same state for example my starting
temperature 300 K becomes 70% as well as my end state temperature 500
K 70 % - the temperature in between has probabilities of staying in
the same state 40 % of the times now they have two neighbors so their
exchange is the same ~ 30 % but to higher and lower temperature hence
only 40% in its own state but should this be the same for all?
Any help appreciated,
Thanks
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Tue Mar 08 2011 - 02:30:02 PST