[AMBER] sander.MPI running on 8 nodes or 1??

From: colvin <colvin4367.gmail.com>
Date: Tue, 8 Mar 2011 17:11:03 +0800

Hi all,

I tried to run my simulations on a machine with 2 quad core processors (8 in
total). When i top, it shows 8 running sander.MPI.

But when i open the .out file from md run, it stated that:

"Running AMBER/MPI version on 1 nodes"

and this actually explained why my simulation taken such a long time, even
for 200 ps (about 3 days).

Pls assist and comment. Thanks.

Thanks and regards,
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Received on Tue Mar 08 2011 - 01:30:05 PST
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