Dear prof. Case,
thank you for your answer. Is this valid for sander in both Amber10 and
Amber11 or just in the latter version?
Thank you again,
Serena
>----Messaggio originale----
>Da: case.biomaps.rutgers.edu
>Data: 16/02/2011 18.14
>A: "serena_leone.libero.it"<serena_leone.libero.it>, "AMBER Mailing List"
<amber.ambermd.org>
>Ogg: Re: [AMBER] V5 dihedrals
>
>On Wed, Feb 16, 2011, serena_leone.libero.it wrote:
>>
>> I would like to know if Sander in Amber10 or Amber11 can handle dihedral
>> potentials described with additional coefficients in a frcmod file (i.e.,
V5
>> besides V1, V2, V3 and V4).
>
>As far as I can see, there is no problem with sander (or with pmemd). The
>nmode and nab codes need an update, which we are working on.
>
>...dac
>
>
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Received on Wed Feb 16 2011 - 10:30:08 PST
