Re: [AMBER] docking in AMBER for protein complex

From: case <>
Date: Thu, 20 Jan 2011 11:38:05 -0500

On Wed, Jan 19, 2011, Chinh Su Tran To wrote:
> I want to dock a complex of proteins (as a ligand) to another protein
> (receptor). The tutorial using AMBER score in DOCK 6 (
> just applies for small molecule as ligands (i.e drug) because it uses
> Antechamber to generate the input file.
> The Antechamber seems not to work for protein, I think, because it gave me
> errors.
> Could anyone please give me some idea or links so I can figure it out?

Dock is not really designed for protein-protein docking. You could ask on
their mailing list (dock-fans) to see if anyone has tried it. But you will
probably want to find code more suitable for that task.

...good luck...dac

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Received on Thu Jan 20 2011 - 09:00:02 PST
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