Dear Maryam,
If you just want to compare two separate rmsd, why you don't use Gnuplot ?
regards,
setyanto
On Wed, Dec 22, 2010 at 7:31 PM, Maryam Hamzehee <maryam_h_7860.yahoo.com>wrote:
> Dear All
>
> I have two trajectories of MD simulation related to wild type and mutant
> form of my ligand in the complex of receptor-ligand. I would like to compare
> the RMSD of pairwise structures but I have not found any option in VMD in
> order to do that. How can I compare the RMSD of two seperate trajectories.
>
> Any help would be appreciated.
>
> Cheers,
> Maryam
>
>
>
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Received on Wed Dec 22 2010 - 18:30:02 PST
