[AMBER] RMSD for two trajectories

From: Maryam Hamzehee <maryam_h_7860.yahoo.com>
Date: Wed, 22 Dec 2010 20:31:26 +0800 (SGT)

Dear All
I have two trajectories of MD simulation related to wild type and mutant form of my ligand in the complex of receptor-ligand. I would like to compare the RMSD of pairwise structures but I have not found any option in VMD in order to do that. How can I compare the RMSD of two seperate trajectories.
Any help would be appreciated.

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Received on Wed Dec 22 2010 - 05:00:04 PST
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