Hello,
I (finally) succeeded in installing AmberTools 1.4 on my OSX 10.6 mac using fink-installed gcc-4.4. To do so, I replaced instances of gcc and g++ in the configure script with gcc-4 and g++4. Most tests PASSED.
However, I am not able to run NAB independently:
[kex:AmberTools/examples/suppose] foster% nab --v
Using built-in specs.
Target: i386-apple-darwin9.8.0
Configured with: ../gcc-4.4.4/configure --prefix=/sw --prefix=/sw/lib/gcc4.4 --mandir=/sw/share/man --infodir=/sw/lib/gcc4.4/info --enable-languages=c,c++,fortran,objc,obj-c++,java --with-gmp=/sw --with-libiconv-prefix=/sw --with-ppl=/sw --with-cloog=/sw --with-mpc=/sw --with-system-zlib --x-includes=/usr/X11R6/include --x-libraries=/usr/X11R6/lib --program-suffix=-fsf-4.4
Thread model: posix
gcc version 4.4.4 (GCC)
COMPILER_PATH=/sw/lib/gcc4.4/libexec/gcc/i386-apple-darwin9.8.0/4.4.4/:/sw/lib/gcc4.4/libexec/gcc/i386-apple-darwin9.8.0/4.4.4/:/sw/lib/gcc4.4/libexec/gcc/i386-apple-darwin9.8.0/:/sw/lib/gcc4.4/lib/gcc/i386-apple-darwin9.8.0/4.4.4/:/sw/lib/gcc4.4/lib/gcc/i386-apple-darwin9.8.0/
LIBRARY_PATH=/sw/lib/gcc4.4/lib/gcc/i386-apple-darwin9.8.0/4.4.4/:/sw/lib/gcc4.4/lib/gcc/i386-apple-darwin9.8.0/4.4.4/../../../:/usr/lib/
COLLECT_GCC_OPTIONS='-mmacosx-version-min=10.6.5' '-I/usr/local/amber11/include' '-v' '-mtune=generic'
/sw/lib/gcc4.4/libexec/gcc/i386-apple-darwin9.8.0/4.4.4/collect2 -dynamic -arch i386 -macosx_version_min 10.6.5 -weak_reference_mismatches non-weak -o a.out -lcrt1.10.5.o -L/sw/lib/gcc4.4/lib/gcc/i386-apple-darwin9.8.0/4.4.4 -L/sw/lib/gcc4.4/lib/gcc/i386-apple-darwin9.8.0/4.4.4/../../.. /usr/local/amber11/lib/libnab.a /usr/local/amber11/lib/arpack.a -lgfortran -framework Accelerate -lm -lgcc_s.10.5 -lgcc -lSystem
Undefined symbols:
"_main", referenced from:
start in crt1.10.5.o
ld: symbol(s) not found
collect2: ld returned 1 exit status
cc failed!
or:
[kex:AmberTools/examples/suppose] foster% nab suppose.nab
Undefined symbols:
"_MAT_istrue", referenced from:
_main in ccFNRvC6.o
ld: symbol(s) not found
collect2: ld returned 1 exit status
cc failed!
Any help would be appreciated.
Thanks,
-M
-----------
Mark P. Foster, Ph.D.
Professor, Interim Chair Department of Biochemistry
(614) 292-1377 The Ohio State University
FAX 292-6773 484 West 12th Ave.
foster.281.osu.edu Columbus, OH 43210-1214
http://www.biosci.ohio-state.edu/~mfoster
---------------------------------------------------------------------
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Mon Dec 20 2010 - 12:00:04 PST
