On Thu, Dec 16, 2010, Sangita Kachhap wrote:
>
> When I checked the PDB generated after docking TER card was removed
> between two DNA strand and both strand were of same chain name.
> so I think these are the reasons for bonding of two strand during
> minimization.
>
> So can anybody sugest me how to resolve this.
Edit the pdb file created by Haddock and put in the proper TER cards.
....dac
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Fri Dec 17 2010 - 06:30:04 PST