Re: [AMBER] error in MD of modeled & docked protein - DAN complex

From: case <case.biomaps.rutgers.edu>
Date: Fri, 17 Dec 2010 09:07:59 -0500

On Thu, Dec 16, 2010, Sangita Kachhap wrote:
>
> When I checked the PDB generated after docking TER card was removed
> between two DNA strand and both strand were of same chain name.
> so I think these are the reasons for bonding of two strand during
> minimization.
>
> So can anybody sugest me how to resolve this.

Edit the pdb file created by Haddock and put in the proper TER cards.

....dac


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Received on Fri Dec 17 2010 - 06:30:04 PST
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