Re: [AMBER] error in MD of modeled & docked protein - DAN complex

From: case <>
Date: Fri, 17 Dec 2010 09:07:59 -0500

On Thu, Dec 16, 2010, Sangita Kachhap wrote:
> When I checked the PDB generated after docking TER card was removed
> between two DNA strand and both strand were of same chain name.
> so I think these are the reasons for bonding of two strand during
> minimization.
> So can anybody sugest me how to resolve this.

Edit the pdb file created by Haddock and put in the proper TER cards.


AMBER mailing list
Received on Fri Dec 17 2010 - 06:30:04 PST
Custom Search