Greetings to all,
I am working on protein with three phophorylated residues. Parameters for
these residues was generated using ANTECHAMBER and was uploaded and it
seemed working . But finally while uploading the protein tleap gave this
message:
*> apoprotein= loadpdb apoprotein.pdb
Loading PDB file: ./apoprotein.pdb
One sided connection. Residue: Displayed missing connect0 atom.
One sided connection. Residue: missing connect1 atom.
One sided connection. Residue: Displayed missing connect0 atom.
One sided connection. Residue: missing connect1 atom.
One sided connection. Residue: Displayed missing connect0 atom.
One sided connection. Residue: missing connect1 atom.
total atoms in file: 2717
Leap added 2660 missing atoms according to residue templates:
2660 H / lone pairs*
I am working on AMBER 10.
Suggestion to this will be of great use.
warm regards,
Baljinder k.Grewal
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Received on Fri Dec 10 2010 - 03:00:04 PST
