Re: [AMBER] Parameterization of ffamber99sb for octane box

From: YUVRAJ UBOVEJA <yuvrajthedon.gmail.com>
Date: Thu, 9 Dec 2010 09:51:21 +0530

Hello all

I have to create an octane box for studying effect of solvent hydrophobicity
on enzyme activation.
Anyone using octane parameterized file in amber?
Please suggest me how to parameterize it or is there any tutorial for it.
As i am a beginner, so plz explain in steps.

Thanks a lot

On Wed, Nov 24, 2010 at 12:39 AM, YUVRAJ UBOVEJA <yuvrajthedon.gmail.com>wrote:

> Hello all
>
> I have to create an octane box for studying effect of solvent
> hydrophobicity on enzyme activation.
> Anyone using octane parameterized file in amber?
> Please suggest me how to parameterize it or is there any tutorial for it.
> As i am a beginner, so plz explain in steps.
>
> Thanks a lot
>
>
> Yuvraj
>



-- 
Yuvraj Uboveja
M.Tech. Bioinformatics
IIIT Hyderabad
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Received on Wed Dec 08 2010 - 20:30:04 PST
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