Re: [AMBER] AmberTools 1.4 serial tests failures

From: Timothy J Giese <timothyjgiese.gmail.com>
Date: Fri, 03 Dec 2010 09:53:14 -0500

Some of the errors suggest that some pointer DEALLOCATE's should
be replaced with pointer NULLIFY's.

I saw something else in the log though that just crashed without
any useful diagnostic.

-Tim

On 12/03/2010 09:48 AM, Daniel Roe wrote:
> Hi,
>
> It's not really certain what the causes for the errors are yet.
> However, other people have reported various issues when using the
> intel 12.0.0 compilers. In my opinion it's probably not worth the
> headache to use a bleeding edge compiler, particularly when other
> compilers have no issues. It's just my opinion, but I'd wait until
> intel comes out with a few more releases of the v12 compilers before I
> start relying on them.
>
> -Dan
>
> On Fri, Dec 3, 2010 at 9:27 AM, Vlad Cojocaru
> <vlad.cojocaru.mpi-muenster.mpg.de> wrote:
>> Dear Ambers,
>>
>> Attached you have 2 files: (i) the config.h file I used to compile the
>> serial version of Amber Tools 1.4 and (ii) the error messages upon 'make
>> test'
>>
>> Several tests fail with error mesages. These errors only occur when I
>> compile with intel 12.0.0 (with MKL 10.3). They are segmentation faults!
>>
>> The compilation worked properly. Also, when compiling with gcc44, there
>> are no error messages for the serial tests.
>>
>> Did anybody experienced these errors and could tell me the cause for them ?
>>
>> Details:
>> Linux x86_64 (2x 6 cores AMD Istanbul chips)
>> CentOS 5.5
>> compiler: intel-12.0.0
>> mkl libs: 10.3
>>
>>
>> Best
>> Vlad
>>
>> --
>> Dr. Vlad Cojocaru
>> Max Planck Institute for Molecular Biomedicine
>> Department of Cellular and Developmental Biology
>> Roentgenstrasse 20
>> 48149 Muenster, Germany
>> tel: +49-251-70365-324
>> fax: +49-251-70365-399
>> email: vlad.cojocaru[at]mpi-muenster.mpg.de
>>
>>
>>
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>>
>>
>
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Received on Fri Dec 03 2010 - 07:00:04 PST
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