Dear AMBER user
I've run RMSd analysis using PTARJ 11. Everything seemed to be fine, but
following error messages was occurred at the end !
*** glibc detected *** ptraj: double free or corruption (!prev):
0x0000000007c59
f30 ***
======= Backtrace: =========
/lib64/libc.so.6[0x3f488722ef]
/lib64/libc.so.6(cfree+0x4b)[0x3f4887273b]
ptraj[0x4218fe]
ptraj[0x48e5ee]
ptraj[0x448aea]
ptraj[0x4519a1]
ptraj[0x4378eb]
ptraj[0x4026c9]
/lib64/libc.so.6(__libc_start_main+0xf4)[0x3f4881d994]
ptraj[0x4022e9]
======= Memory map: ========
00400000-00557000 r-xp 00000000 00:34 6643781
/gpfs_y
ingling/ygyingli/Shared_Data/bin1/amber11/bin/ptraj
00756000-00760000 rw-p 00156000 00:34 6643781
/gpfs_y
ingling/ygyingli/Shared_Data/bin1/amber11/bin/ptraj
00760000-00764000 rw-p 00760000 00:00 0
07b82000-07d6f000 rw-p 07b82000 00:00 0
[heap]
3f47800000-3f4781c000 r-xp 00000000 08:06 2191488
/lib64/
ld-2.5.so
3f47a1b000-3f47a1c000 r--p 0001b000 08:06 2191488
/lib64/
ld-2.5.so
3f47a1c000-3f47a1d000 rw-p 0001c000 08:06 2191488
/lib64/
ld-2.5.so
3f48800000-3f4894d000 r-xp 00000000 08:06 2191489
/lib64/
libc-2.5.so
3f4894d000-3f48b4d000 ---p 0014d000 08:06 2191489
/lib64/
libc-2.5.so
3f48b4d000-3f48b51000 r--p 0014d000 08:06 2191489
/lib64/
libc-2.5.so
3f48b51000-3f48b52000 rw-p 00151000 08:06 2191489
/lib64/
libc-2.5.so
3f48b52000-3f48b57000 rw-p 3f48b52000 00:00 0
3f49000000-3f49082000 r-xp 00000000 08:06 2191492
/lib64/
libm-2.5.so
3f49082000-3f49281000 ---p 00082000 08:06 2191492
/lib64/
libm-2.5.so
3f49281000-3f49282000 r--p 00081000 08:06 2191492
/lib64/
libm-2.5.so
3f49282000-3f49283000 rw-p 00082000 08:06 2191492
/lib64/
libm-2.5.so
3f4d000000-3f4d00d000 r-xp 00000000 08:06 2191500
/lib64/
libgcc_s-4.1.2-20080825.so.1
3f4d00d000-3f4d20d000 ---p 0000d000 08:06 2191500
/lib64/
libgcc_s-4.1.2-20080825.so.1
3f4d20d000-3f4d20e000 rw-p 0000d000 08:06 2191500
/lib64/
libgcc_s-4.1.2-20080825.so.1
2b85e40d1000-2b85e40d3000 rw-p 2b85e40d1000 00:00 0
2b85e4128000-2b85e4129000 rw-p 2b85e4128000 00:00 0
2b85e4129000-2b85e41bf000 r-xp 00000000 08:06 77497
/usr/li
b64/libgfortran.so.1.0.0
2b85e41bf000-2b85e43be000 ---p 00096000 08:06 77497
/usr/li
b64/libgfortran.so.1.0.0
2b85e43be000-2b85e43c0000 rw-p 00095000 08:06 77497
/usr/li
b64/libgfortran.so.1.0.0
2b85e43c0000-2b85e4f50000 rw-p 2b85e43c0000 00:00 0
2b85e51f0000-2b85e528c000 rw-p 2b85e51f0000 00:00 0
7ffff9190000-7ffff91a5000 rw-p 7ffffffea000 00:00 0
[stack]
ffffffffff600000-ffffffffffe00000 ---p 00000000 00:00 0
[vdso]
Abort
AMBER11 which I'm using was already applied bugfix version. And I loaded 3
trajectory when I tried to analyze rmsd files (trajectories are more than
3Gb each, has 5ns timesteps each. These files are all connect namely, they
are on the line, just separated).
Thanks in advance
Hoshin Kim
----------------------------------------------------------------------------
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Hoshin Kim
Now)
Visiting Scholar
Department of Chemical and Biomolecular Engineering
North Carolina State University
Raleigh, NC 27695
Phone: 919-986-9258
Also)
Graduate student (M.D. candidate)
Ionic Liquids Team(ILs) in Bio Nano Process Lab
Department of Biological Engineering,
2S 113, Engineering building Inha University,
253 Yonghyeon Dong, Nam Ku
Incheon, KOREA
TEL) +82-32-860-8655
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Received on Thu Dec 02 2010 - 11:00:05 PST
