You can do this in VMD (File -> Save Coordinates...) or using ptraj with the
trajout command and specifying pdb for the output file type.
Good luck!
-Bill
On Tue, Oct 26, 2010 at 9:24 PM, xuemeiwang1103 <xuemeiwang1103.163.com>wrote:
> Dear All :
> I have run a system for 1 ns and wrote down the mdcrd file every 1ps
> .There are 1000 frames in my file.It is too big to load the file into the
> VMD.So I extract 10 frames from the mdcrd file and save it as a new mdcrd
> file.Now if I want to save the each frame as a PDB file from the new mdcrd
> file.How should I do ? Could someone help me ?Thank you very much!
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>
--
Bill Miller III
Quantum Theory Project,
University of Florida
Ph.D. Graduate Student
352-392-6715
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Received on Tue Oct 26 2010 - 19:00:02 PDT
