Use this command sentence ambpdb -p .prmtop < .rst
> .pdb
-----xuemeiwang1103 <xuemeiwang1103.163.com> wrote: -----
To: amber <amber.ambermd.org>
From: xuemeiwang1103 <xuemeiwang1103.163.com>
Date: 10/26/2010 08:24PM
Subject: [AMBER] How to get the PDB file?
Dear All :
I have run a system for 1 ns and wrote down the mdcrd file every 1ps
.There are 1000 frames in my file.It is too big to load the file into the
VMD.So I extract 10 frames from the mdcrd file and save it as a new mdcrd
file.Now if I want to save the each frame as a PDB file from the new mdcrd
file.How should I do ? Could someone help me ?Thank you very much!
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Received on Wed Oct 27 2010 - 08:30:02 PDT
