Did you 'make clean' before you re-configured with the intel compilers?
-Bill
On Sat, Oct 16, 2010 at 12:40 AM, ying yu <helen.yingyu.gmail.com> wrote:
> When I compile the mpi CPU version,
>
> In the $AMBERHOME/AmberTools/src
>
> ./configure –mpi gnu
>
> Make parallel
>
> The mpi version pmemd could be built successfully.
>
>
>
> But If I use:
>
> ./configure –mpi intel
>
> There is no error in this step,
>
> When I do : make parallel
>
> There will comes out:
>
>
>
> gcc: language Host not recognized
>
> gcc: language Host not recognized
>
> gcc: rand2.c: linker input file unused because linking not done
>
> mpicc -c -Dflex -ip -O3 -xHost -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE
> -DBINTRAJ -DMPI -o sasad.o sasad.c
>
> gcc: language Host not recognized
>
> gcc: language Host not recognized
>
> gcc: sasad.c: linker input file unused because linking not done
>
> flex -t mm_options.l | sed -e 's/{stdout}/{DONTchangeSTDOUThere}/' -e
> 's/yy/mmo/g' -e 's/stdout/nabout/' -e 's/DONTchangeSTDOUThere/stdout/' >
> lex.mm_options.c
>
> mpicc -c -Dflex -ip -O3 -xHost -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE
> -DBINTRAJ -DMPI -o sff.o sff.c
>
> gcc: language Host not recognized
>
> gcc: language Host not recognized
>
> gcc: sff.c: linker input file unused because linking not done
>
> mpicc -c -Dflex -ip -O3 -xHost -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE
> -DBINTRAJ -DMPI -o time.o time.c
>
> gcc: language Host not recognized
>
> gcc: language Host not recognized
>
> gcc: time.c: linker input file unused because linking not done
>
> mpicc -c -Dflex -ip -O3 -xHost -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE
> -DBINTRAJ -DMPI -o traceback.o traceback.c
>
> gcc: language Host not recognized
>
> gcc: language Host not recognized
>
> gcc: traceback.c: linker input file unused because linking not done
>
> mpicc -c -Dflex -ip -O3 -xHost -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE
> -DBINTRAJ -DMPI -o xminC.o xminC.c
>
> gcc: language Host not recognized
>
> gcc: language Host not recognized
>
> gcc: xminC.c: linker input file unused because linking not done
>
> rm -f libsff.a
>
> ar rv libsff.a binpos.o conjgrad.o lmodC.o memutil.o nblist.o newton.o
> nmode.o prm.o rand2.o sasad.o sff.o time.o traceback.o xminC.o
>
> ar: creating libsff.a
>
> ar: binpos.o: No such file or directory
>
> make[2]: *** [libsff.a] Error 1
>
> make[2]: Leaving directory
> `/home/yiyu/Amber-withlicense/amber/AmberTools/src/sff'
>
> make[1]: *** [libsff] Error 2
>
> make[1]: Leaving directory
> `/home/yiyu/Amber-withlicense/amber/AmberTools/src/nab'
>
> make: *** [parallel] Error 2
>
>
>
> seems it doesn’t use icc as the compiler, did I miss something?
>
>
>
> Thanks,
>
>
>
> Ying
>
> --
> Happy Helen
>
>
>
> --
> Happy Helen
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Bill Miller III
Quantum Theory Project,
University of Florida
Ph.D. Graduate Student
352-392-6715
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Received on Sat Oct 16 2010 - 05:30:02 PDT
