[AMBER] AMBER parallel version

From: ying yu <helen.yingyu.gmail.com>
Date: Fri, 15 Oct 2010 21:40:31 -0700

When I compile the mpi CPU version,

In the $AMBERHOME/AmberTools/src

./configure –mpi gnu

Make parallel

The mpi version pmemd could be built successfully.



But If I use:

./configure –mpi intel

There is no error in this step,

When I do : make parallel

There will comes out:



gcc: language Host not recognized

gcc: language Host not recognized

gcc: rand2.c: linker input file unused because linking not done

mpicc -c -Dflex -ip -O3 -xHost -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE
-DBINTRAJ -DMPI -o sasad.o sasad.c

gcc: language Host not recognized

gcc: language Host not recognized

gcc: sasad.c: linker input file unused because linking not done

flex -t mm_options.l | sed -e 's/{stdout}/{DONTchangeSTDOUThere}/' -e
's/yy/mmo/g' -e 's/stdout/nabout/' -e 's/DONTchangeSTDOUThere/stdout/' >
lex.mm_options.c

mpicc -c -Dflex -ip -O3 -xHost -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE
-DBINTRAJ -DMPI -o sff.o sff.c

gcc: language Host not recognized

gcc: language Host not recognized

gcc: sff.c: linker input file unused because linking not done

mpicc -c -Dflex -ip -O3 -xHost -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE
-DBINTRAJ -DMPI -o time.o time.c

gcc: language Host not recognized

gcc: language Host not recognized

gcc: time.c: linker input file unused because linking not done

mpicc -c -Dflex -ip -O3 -xHost -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE
-DBINTRAJ -DMPI -o traceback.o traceback.c

gcc: language Host not recognized

gcc: language Host not recognized

gcc: traceback.c: linker input file unused because linking not done

mpicc -c -Dflex -ip -O3 -xHost -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE
-DBINTRAJ -DMPI -o xminC.o xminC.c

gcc: language Host not recognized

gcc: language Host not recognized

gcc: xminC.c: linker input file unused because linking not done

rm -f libsff.a

ar rv libsff.a binpos.o conjgrad.o lmodC.o memutil.o nblist.o newton.o
nmode.o prm.o rand2.o sasad.o sff.o time.o traceback.o xminC.o

ar: creating libsff.a

ar: binpos.o: No such file or directory

make[2]: *** [libsff.a] Error 1

make[2]: Leaving directory
`/home/yiyu/Amber-withlicense/amber/AmberTools/src/sff'

make[1]: *** [libsff] Error 2

make[1]: Leaving directory
`/home/yiyu/Amber-withlicense/amber/AmberTools/src/nab'

make: *** [parallel] Error 2



seems it doesn’t use icc as the compiler, did I miss something?



Thanks,



Ying

-- 
Happy Helen
-- 
Happy Helen
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Received on Fri Oct 15 2010 - 22:00:03 PDT