[AMBER] Shake errors

From: Justine Shaw <j-shaw.northwestern.edu>
Date: Thu, 23 Sep 2010 11:01:47 -0500

Hi Amber-ites,
Hope you can help me solve a tiny problem I am having with a simulation. I
am simulating a bis(N-methylimidazole)- meso-tetraphenyl iron porphyrin in
water. I keep getting shake errors even when i heat the structure slowly
using NMR constraints. Ideally I would like to run a 10 nsec simulation,
but I keep getting the shake error after about 60 psec or so. Any ideas on
something I can try??Any help is appreciated,
Best,
Justine
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu Sep 23 2010 - 09:30:05 PDT
Custom Search