Hi, I'm doing molecular dynamics (pmemd) for a dimer protein, each monomer
has about 400 residues. I would like to know if it is possible to do the MD
only for one monomer and keep the other frozen during MD (like a rigid body)
in order to save computing time. If I apply restraints to the other monomer,
I won' t save any time, Is that right?
Thanks
Laura.
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Received on Thu Sep 23 2010 - 09:00:06 PDT
