Re: [AMBER] Shake errors

From: Bill Ross <ross.cgl.ucsf.EDU>
Date: Thu, 23 Sep 2010 12:14:16 -0700

> I keep getting shake errors even when i heat the structure slowly
> using NMR constraints.

Have you tried looking at a movie of the trajectory (mdcrd file, e.g.
with VMD) to see where the problem spot is? Then you can focus on the
parameterization of the atom(s) in question.

Bill

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Received on Thu Sep 23 2010 - 13:00:05 PDT
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