Hello Dan,
Sorry about the bad links. This should be better
http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6TGP-3YB4DPX-3&_user=10&_coverDate=04/30/1999&_rdoc=3&_fmt=high&_orig=browse&_origin=browse&_zone=rslt_list_item&_srch=doc-info(%23toc%235260%231999%23999829997%23153829%23FLA%23display%23Volume)&_cdi=5260&_sort=d&_docanchor=&_ct=5&_acct=C000050221&_version=1&_urlVersion=0&_userid=10&md5=c6b510416c0eb16fdf0135e542a705c6&searchtype=a<
http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6TGP-3YB4DPX-3&_user=10&_coverDate=04/30/1999&_rdoc=3&_fmt=high&_orig=browse&_origin=browse&_zone=rslt_list_item&_srch=doc-info%28%23toc%235260%231999%23999829997%23153829%23FLA%23display%23Volume%29&_cdi=5260&_sort=d&_docanchor=&_ct=5&_acct=C000050221&_version=1&_urlVersion=0&_userid=10&md5=c6b510416c0eb16fdf0135e542a705c6&searchtype=a>
2D rdf uses two reference points eg N --- Ow ---- O where looking at
distribution between N -- Ow and Ow -- O simultaneously.
Yes my coordinates are in AMBER format but I don't understand exactly how
this histograming should work.
Lekpa
On Tue, Sep 21, 2010 at 4:40 AM, Daniel Sindhikara <sindhikara.gmail.com>wrote:
> Hi,
> It's hard to tell what exactly you're looking for for two reasons:
> 1) Your links seem to be related to your institution (can you find a
> permalink?)
> 2) What do you mean by 2D RDF? you mean between two different pairs?
>
> If the coordinates are calculable in ptraj (which is likely) then you can
> just run ptraj and 2D histogram the results.
>
>
> --Dan
>
> On Tue, Sep 21, 2010 at 6:36 PM, Lekpa Duukori <duukori.gmail.com> wrote:
>
> > Hi everyone,
> >
> > Does anyone know of a software that can calculate 2D radial distribution
> > functions as described in
> >
> > *The mean hydration of carbohydrates as studied by normalized
> > two-dimensional radial pair
> > distributions<
> >
> http://0-apps.isiknowledge.com.darius.uleth.ca/full_record.do?product=WOS&qid=15&SID=4CfNkjLfobNIh86blda&doc=1&colname=WOS
> > >
> > *
> > Andersson C<
> >
> http://0-apps.isiknowledge.com.darius.uleth.ca/DaisyOneClickSearch.do?product=WOS&search_mode=DaisyOneClickSearch&db_id=&SID=4CfNkjLfobNIh86blda&name=Andersson%20C&ut=000085179400003&pos=1
> > >
> > , Engelsen SB<
> >
> http://0-apps.isiknowledge.com.darius.uleth.ca/DaisyOneClickSearch.do?product=WOS&search_mode=DaisyOneClickSearch&db_id=&SID=4CfNkjLfobNIh86blda&name=Engelsen%20SB&ut=000085179400003&pos=2
> > >
> > *JOURNAL OF MOLECULAR GRAPHICS & MODELLING* Volume: 17 Issue: 2 Pages:
> > 101-+
> > Published: APR 1999
> >
> > Thanks
> >
> > Lekpa
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
>
>
>
> --
> Dr. Daniel J. Sindhikara
> Institute for Molecular Science
> E-mail: sindhikara.gmail.com
> Website: http://sites.google.com/site/dansindhikara/
> --
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Tue Sep 21 2010 - 04:30:03 PDT
