Which machine? Do they not already have amber11 installed? Can you put in
a request for it?
On Sat, Sep 18, 2010 at 10:10 PM, Anuradha Mittal <anuradha.mittal.gmail.com
> wrote:
> I don't have any of these. I am trying to compile on teragrid and don't
> have
> permissions to add those libraries there (if that's the solution). Is there
> any other way out?
>
> On Sat, Sep 18, 2010 at 9:05 PM, Jason Swails <jason.swails.gmail.com
> >wrote:
>
> > Hello,
> >
> > On Sat, Sep 18, 2010 at 10:00 PM, Anuradha Mittal <
> > anuradha.mittal.gmail.com
> > > wrote:
> >
> > > Hi,
> > >
> > > I am trying to install Amber11 in parallel using intel processor.
> > >
> > > I am getting the following error:
> > > ld: cannot find -lrdmacm
> > > make[2]: *** [pmemd.MPI] Error 1
> > > make[2]: Leaving directory `/u/ac/amitta2/amber11/src/pmemd/src'
> > > make[1]: *** [parallel] Error 2
> > > make[1]: Leaving directory `/u/ac/amitta2/amber11/src/pmemd'
> > > make: *** [parallel] Error 2
> > >
> > > which mpif90
> > > /usr/local/mvapich2-1.2-intel-ofed-1.2.5.5/bin/mpif90
> > >
> > > which mpirun
> > > /usr/local/mvapich2-1.2-intel-ofed-1.2.5.5/bin/mpirun
> > >
> > > mpif90 -show
> > > ifort -L/usr/local/ofed-1.2.5.5/lib64
> > > -I/usr/local/mvapich2-1.2-intel-ofed-1.2.5.5/include
> > > -I/usr/local/mvapich2-1.2-intel-ofed-1.2.5.5/include
> > > -L/usr/local/mvapich2-1.2-intel-ofed-1.2.5.5/lib -lmpichf90 -Wl,-rpath
> > > -Wl,/usr/local/mvapich2-1.2-intel-ofed-1.2.5.5/lib -lmpichf90 -lmpich
> > > -lpthread -lrdmacm -libverbs -libumad -lrt
> > >
> >
> > Do you see a "librdmacm.so" or "librdmacm.a" in
> > usr/local/mvapich2-1.2-intel-ofed-1.2.5.5/lib ? For some reason, your
> > install is having a hard time finding one of these files.
> >
> >
> > >
> > > Any help will be much appreciated.
> > >
> > > Thanks
> > > Anu
> > > _______________________________________________
> > > AMBER mailing list
> > > AMBER.ambermd.org
> > > http://lists.ambermd.org/mailman/listinfo/amber
> > >
> >
> >
> >
> > --
> > Jason M. Swails
> > Quantum Theory Project,
> > University of Florida
> > Ph.D. Graduate Student
> > 352-392-4032
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Graduate Student
352-392-4032
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Received on Sat Sep 18 2010 - 20:30:04 PDT
