This is ncsa abe. They have only amber10. I will try to put in a request.
Thanks!
On Sat, Sep 18, 2010 at 10:14 PM, Jason Swails <jason.swails.gmail.com>wrote:
> Which machine? Do they not already have amber11 installed? Can you put in
> a request for it?
>
> On Sat, Sep 18, 2010 at 10:10 PM, Anuradha Mittal <
> anuradha.mittal.gmail.com
> > wrote:
>
> > I don't have any of these. I am trying to compile on teragrid and don't
> > have
> > permissions to add those libraries there (if that's the solution). Is
> there
> > any other way out?
> >
> > On Sat, Sep 18, 2010 at 9:05 PM, Jason Swails <jason.swails.gmail.com
> > >wrote:
> >
> > > Hello,
> > >
> > > On Sat, Sep 18, 2010 at 10:00 PM, Anuradha Mittal <
> > > anuradha.mittal.gmail.com
> > > > wrote:
> > >
> > > > Hi,
> > > >
> > > > I am trying to install Amber11 in parallel using intel processor.
> > > >
> > > > I am getting the following error:
> > > > ld: cannot find -lrdmacm
> > > > make[2]: *** [pmemd.MPI] Error 1
> > > > make[2]: Leaving directory `/u/ac/amitta2/amber11/src/pmemd/src'
> > > > make[1]: *** [parallel] Error 2
> > > > make[1]: Leaving directory `/u/ac/amitta2/amber11/src/pmemd'
> > > > make: *** [parallel] Error 2
> > > >
> > > > which mpif90
> > > > /usr/local/mvapich2-1.2-intel-ofed-1.2.5.5/bin/mpif90
> > > >
> > > > which mpirun
> > > > /usr/local/mvapich2-1.2-intel-ofed-1.2.5.5/bin/mpirun
> > > >
> > > > mpif90 -show
> > > > ifort -L/usr/local/ofed-1.2.5.5/lib64
> > > > -I/usr/local/mvapich2-1.2-intel-ofed-1.2.5.5/include
> > > > -I/usr/local/mvapich2-1.2-intel-ofed-1.2.5.5/include
> > > > -L/usr/local/mvapich2-1.2-intel-ofed-1.2.5.5/lib -lmpichf90
> -Wl,-rpath
> > > > -Wl,/usr/local/mvapich2-1.2-intel-ofed-1.2.5.5/lib -lmpichf90 -lmpich
> > > > -lpthread -lrdmacm -libverbs -libumad -lrt
> > > >
> > >
> > > Do you see a "librdmacm.so" or "librdmacm.a" in
> > > usr/local/mvapich2-1.2-intel-ofed-1.2.5.5/lib ? For some reason, your
> > > install is having a hard time finding one of these files.
> > >
> > >
> > > >
> > > > Any help will be much appreciated.
> > > >
> > > > Thanks
> > > > Anu
> > > > _______________________________________________
> > > > AMBER mailing list
> > > > AMBER.ambermd.org
> > > > http://lists.ambermd.org/mailman/listinfo/amber
> > > >
> > >
> > >
> > >
> > > --
> > > Jason M. Swails
> > > Quantum Theory Project,
> > > University of Florida
> > > Ph.D. Graduate Student
> > > 352-392-4032
> > > _______________________________________________
> > > AMBER mailing list
> > > AMBER.ambermd.org
> > > http://lists.ambermd.org/mailman/listinfo/amber
> > >
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
>
>
>
> --
> Jason M. Swails
> Quantum Theory Project,
> University of Florida
> Ph.D. Graduate Student
> 352-392-4032
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Sat Sep 18 2010 - 20:30:05 PDT
