Re: [AMBER] Packmol file cannot minimized

From: case <case.biomaps.rutgers.edu>
Date: Thu, 26 Aug 2010 07:34:35 -0400

On Thu, Aug 26, 2010, setyanto tri wahyudi wrote:
>
> Here is the exact output of mdout file.
> -------------------------------------------------------
> Amber 10 SANDER 2008
> -------------------------------------------------------
>
> This output not change after several minutes. It looks like the computer
> hang.
> Do you have any suggest ?

Sure: start from a set of input files that works (say with a very short run,
with one step of minimization). Then start to morph the working inputs into
to the ones that fail, looking for the change that causes the problem.

....dac


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Received on Thu Aug 26 2010 - 05:00:03 PDT
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