Dear sir,
Thank you responding me, Yes I want to simulate many unit (like 10
disaccharide and 200 water molecule) and 10 disaccharide and a protein . Yes
it may be docking.
Thanking you
subrata
On Mon, Aug 23, 2010 at 1:10 PM, Sushil Mishra <sushilbioinfo.gmail.com>wrote:
> On Mon, Aug 23, 2010 at 11:02 AM, subrata paul <paul.subrata34.gmail.com
> >wrote:
>
> > Dear Sir
> >
> > I am totaly new in amber10 and going through B1,B2,B3,B4 tutorial.Now I
> am
> > want to simulate a system having disaccharide and Water.But, I can
> simulate
> > one disaccharide (Glycam force field for disaccharide,.) by solvating in
> > water. Now i want to increase the number of disaccharide molecules.
>
> (do you mean that instead of one saccharide you want to simulate many units
> of same disacchrides in water ?? )
>
> > So how i increase the number of disacchride in the system. how we add
> this
> > disaccharide molecule to a protein (I think you aare asking about docking
> > ??? is it ??).
> > please halp me regarding this .
> > thank you in advance.
> >
> >
> > subrata
> > student
> > Indian Instiute of Technology,Guwahati.
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Received on Mon Aug 23 2010 - 03:00:05 PDT
