Dear Prof.Case,
Thanks for your comments.
I ran:
*ls -l yacc**
it showed:
*-rwxrwxrwx 1 CEAM None 218348 2010-05-07 12:27 yacc (This should be
result of my chmod command)
-rwxr-xr-x 1 CEAM None 100426 2010-07-12 22:09 yacc.exe
*
I ran
*file yacc*
it showed:
*yacc: ELF 64-bit LSB executable, x86-64, version 1 (SYSV), dynamically
linked (uses shared libs), for GNU/Linux 2.6.9, not stripped*
for:
*file yacc.exe*
it showed:
*yacc.exe: PE32 executable for MS Windows (console) Intel 80386 32-bit*
I noticed that the date for yacc is prior to my installation of
AmberTools1.4, might this be the problem? Should I delete yacc file?
Thanks,
Yan
On Tue, Jul 13, 2010 at 5:18 AM, case <case.biomaps.rutgers.edu> wrote:
> On Mon, Jul 12, 2010, Yan Gao wrote:
> >
> > I am trying to install amberTools 1.4 in cygwin 1.7, and had below error:
>
> > Also I found both *yacc* and *yacc.exe* in the bin folder.
>
> This is quite odd. Please run "ls -l" and "file" on the "yacc" and
> "yacc.exe"
> files. I'm not sure where "yacc" would have come from, but (as far as I
> can
> see) it should not be there.
>
> >
> > I tried to link the yacc.exe to yacc with:
> > *ln -s yacc.exe yacc*
> > and it showed:
> > ln: creating symbolic link `yacc': File exists (it showed even I delete
> the
> > existing yacc file ...)
>
> More weirdness, which may be hard to debug remotely, unless someone sees
> some
> clue here. You need to find out what sort of file "yacc" is, and when it
> is
> being created.
>
> [Note that we try to support cygwin, but very few of the developers
> actually use Windows as a computing platform.]
>
> ....dac
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Yan Gao
Jacobs School of Engineering
University of California, San Diego
Tel: 858-952-2308
Email: Yan.Gao.2001.gmail.com
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Tue Jul 13 2010 - 09:30:03 PDT
