While you don't need Amber11 to run MMPBSA.py, you do need AmberTools-1.4 to
build the nab entropy program. My suggestion is to compile AmberTools-1.4,
then create a soft link from AmberTools-1.4 nab into your amber10 or amber9
directory so that MMPBSA.py uses the proper version of nab.
Good luck!
Jason
On Sun, Jun 27, 2010 at 7:53 AM, rameshwar prajapati <
rameshwar.niper.gmail.com> wrote:
> *i have installed the python 2.6
> but still i am getting error in mmpbsa_py installation
>
> /bin/bash setup.sh *
> *> Python version 2 detected. No file conversion necessary. *
> *> /bin/cp MMPBSA.py *pyc /home/r.yu/amber10/bin *
> *> /home/r.yu/amber10/bin/nab -o mmpbsa_py_nabnmode mmpbsa_entropy.nab *
> *> mmpbsa_entropy.nab:58 fld 'ls_method' not in struct 'xo' *
> *> mmpbsa_entropy.nab:58 operator '=': left operand has wrong class. *
> *> mmpbsa_entropy.nab:58 unknown attribute 'ls_method' *
> *> mmpbsa_entropy.nab:59 fld 'ls_maxiter' not in struct 'xo' *
> *> mmpbsa_entropy.nab:59 operator '=': left operand has wrong class. *
> *> mmpbsa_entropy.nab:59 unknown attribute 'ls_maxiter' *
> *> mmpbsa_entropy.nab:60 fld 'ls_maxatmov' not in struct 'xo' *
> *> mmpbsa_entropy.nab:60 operator '=': left operand has wrong class. *
> *> mmpbsa_entropy.nab:60 unknown attribute 'ls_maxatmov' *
> *> nab2c failed! *
> *> make: [install] Error 1 (ignored) *
> *> /bin/mv mmpbsa_py_nabnmode /home/r.yu/amber10/bin *
> *> /bin/mv: cannot stat `mmpbsa_py_nabnmode': No such file or directory *
> *> make: [install] Error 1 (ignored)
>
> please suggest me a solution
> Best regards
> Rameshwar Prajapati
> *
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>
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Graduate Student
352-392-4032
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Received on Sun Jun 27 2010 - 08:00:04 PDT
