Re: [AMBER] Can't locate mm_pbsa_global.pm in .INC

From: fancy2012 <fancy2012.yeah.net>
Date: Sat, 26 Jun 2010 09:04:49 +0800 (CST)

Dear Jason,
The problem has been solved. I just added the environment setting of AMBER to .bashrc, then it worked. Usually I set these environment in the file /etc/profile. Maybe there is something wrong with the environment settings. Thanks very much!
All the best,
fancy





>Where is the script mm_pbsa_global.pm? It should be present in
>/usr/local/amber10/src/mm_pbsa. The error is that this script cannot be
>found. It should be in $AMBERHOME/src/mm_pbsa.
>
>Good luck!
>Jason
>
>On Fri, Jun 25, 2010 at 5:05 AM, fancy2012 <fancy2012.yeah.net> wrote:
>
>> Dear amber users,
>> I have met a problem when doing mm_pbsa.pl calculations. whenever I run
>> mm_pbssa.pl, I will get the error like this:
>> Can't locate mm_pbsa_global.pm in .INC (@INC contains:
>> :/usr/local/amber10:/usr/local/amber10:/usr/local/amber10:/usr/local/amber10/src/mm_pbsa
>> /usr/lib64/perl5/site_perl/5.8.8/x86_64-linux-thread-multi
>> /usr/lib/perl5/site_perl/5.8.8 /usr/lib/perl5/site_perl
>> /usr/lib64/perl5/vendor_perl/5.8.8/x86_64-linux-thread-multi
>> /usr/lib/perl5/vendor_perl/5.8.8 /usr/lib/perl5/vendor_perl
>> /usr/lib64/perl5/5.8.8/x86_64-linux-thread-multi /usr/lib/perl5/5.8.8 .) at
>> /usr/local/amber10/bin/mm_pbsa.pl line 23.
>> BEGIN failed--compilation aborted at /usr/local/amber10/bin/mm_pbsa.plline 23.
>> But when I source the environment setting by "source /etc/profile", I can
>> run mm_pbsa.pl correctly. The amber environment setting is like this:
>> AMBERHOME=/usr/local/amber10
>> export AMBERHOME
>> export PATH=$PATH:$AMBERHOME/bin
>> I don't know what is the problem? Could someone tell me how to deal with
>> it?
>>
>> Thanks very much in advance!
>> fancy
>> _______________________________________________
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>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
>>
>
>
>
>--
>Jason M. Swails
>Quantum Theory Project,
>University of Florida
>Ph.D. Graduate Student
>352-392-4032
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Received on Fri Jun 25 2010 - 18:30:03 PDT
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