Where is the script mm_pbsa_global.pm? It should be present in
/usr/local/amber10/src/mm_pbsa. The error is that this script cannot be
found. It should be in $AMBERHOME/src/mm_pbsa.
Good luck!
Jason
On Fri, Jun 25, 2010 at 5:05 AM, fancy2012 <fancy2012.yeah.net> wrote:
> Dear amber users,
> I have met a problem when doing mm_pbsa.pl calculations. whenever I run
> mm_pbssa.pl, I will get the error like this:
> Can't locate mm_pbsa_global.pm in .INC (.INC contains:
> :/usr/local/amber10:/usr/local/amber10:/usr/local/amber10:/usr/local/amber10/src/mm_pbsa
> /usr/lib64/perl5/site_perl/5.8.8/x86_64-linux-thread-multi
> /usr/lib/perl5/site_perl/5.8.8 /usr/lib/perl5/site_perl
> /usr/lib64/perl5/vendor_perl/5.8.8/x86_64-linux-thread-multi
> /usr/lib/perl5/vendor_perl/5.8.8 /usr/lib/perl5/vendor_perl
> /usr/lib64/perl5/5.8.8/x86_64-linux-thread-multi /usr/lib/perl5/5.8.8 .) at
> /usr/local/amber10/bin/mm_pbsa.pl line 23.
> BEGIN failed--compilation aborted at /usr/local/amber10/bin/mm_pbsa.plline 23.
> But when I source the environment setting by "source /etc/profile", I can
> run mm_pbsa.pl correctly. The amber environment setting is like this:
> AMBERHOME=/usr/local/amber10
> export AMBERHOME
> export PATH=$PATH:$AMBERHOME/bin
> I don't know what is the problem? Could someone tell me how to deal with
> it?
>
> Thanks very much in advance!
> fancy
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> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Graduate Student
352-392-4032
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Received on Fri Jun 25 2010 - 07:00:05 PDT
