I agree with Indrajeet. Make sure that you export the PATHS in .bashrc file or
.csh file and source it.
Thanks & Best Regards,
Sudeep Narayan Banerjee
---------- Original Message -----------
From: Indrajit Deb <biky2004indra.gmail.com>
To: AMBER Mailing List <amber.ambermd.org>
Sent: Thu, 17 Jun 2010 12:52:06 +0530
Subject: Re: [AMBER] amber10 installation problem
> Hi,
> I think you have to put your amber10 package in your home directory and
> compile it here. Because here you have all the permissions. Don't
> put the amber10 package under /software. Then give the proper path
> and test it. I am confident that you will not get any error message.
>
> Thanks and regards.
>
> ---------------------------------------------------------------------
> Indrajit Deb
> Kolkata. India.
> Ph. +919239202278
>
> On Wed, Jun 16, 2010 at 10:28 PM, case <case.biomaps.rutgers.edu> wrote:
>
> > On Wed, Jun 16, 2010, Devlina Chakravarty wrote:
> > >
> > > make test.parallel.QMMM < /dev/null
> > > export TESTsander=/software/amber10/
> > > exe/sander.MPI; make test.sander.QMMM
> > > make[1]: Entering directory `/software/amber10/test'
> > > cd qmmm2/xcrd_build_test/ && ./Run.oct_nma_imaged
> > > mdin: Permission denied.
> > > touch: cannot touch `dummy': Permission denied
> >
> > It looks like you don't have write permissions in the directory you are
> > running the test cases. You will need to fix this, perhaps by copying the
> > test directory to someplace you have write permission.
> >
> > ....dac
> >
> >
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> >
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------- End of Original Message -------
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Received on Thu Jun 17 2010 - 01:30:03 PDT
