Re: [AMBER] problems with NAB and SHIFTS

From: Jakob Toudahl Nielsen <jtn.chem.au.dk>
Date: Tue, 15 Jun 2010 15:43:59 +0200

Thanks alot,

I proceed trying to install, but it seems that I need something
more... I hope you can help me here is output from shifts install:

best regards, Jakob

[jtn.fe2 shifts-4.3]$ make install
mkdir bin
cd src; make install
make[1]: Entering directory `/home/jtn/shiftS/shifts-4.3/src'
nab -c shifts_emp.nab
nab -c ring_current.nab
nab -c get_banis_info.nab
nab -c plane.nab
nab -c read_obs_shifts.nab
nab -c ax_susc.nab
nab -c sbcoil.nab
nab -c swap_shifts.nab
nab -c get_pep_info.nab
nab -c get_sugar_info.nab
nab -c get_chi_info.nab
nab -c el.nab
nab -c get_dist_ang.nab
nab -c write_headers.nab
nab -c get_vdwa.nab
nab -c shifts_qdb.nab
nab -o shifts shifts.o shifts_emp.o ring_current.o get_banis_info.o
plane.o read_obs_shifts.o ax_susc.o sbcoil.o swap_shifts.o
get_pep_info.o get_sugar_info.o get_chi_info.o el.o get_dist_ang.o
write_headers.o get_vdwa.o shifts_qdb.o
/usr/bin/ld: cannot find -lgfortran
collect2: ld returned 1 exit status
cc failed!
make[1]: *** [shifts] Error 1
make[1]: Leaving directory `/home/jtn/shiftS/shifts-4.3/src'
make: *** [install] Error 2

Citing case <case.biomaps.rutgers.edu>:

> On Tue, Jun 15, 2010, Jakob Toudahl Nielsen wrote:
>>
>> I am trying to install SHIFTS, and need NAB for the execution.
>
> The SHIFTS code assumes that you have installed AmberTools, and that
> $AMBERHOME/bin is in your $PATH (so that the nab compiler can be found).
>
> ....good luck...dac
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>



-- 
Jakob Toudahl Nielsen, post doc
Laboratory for Biomolecular NMR Spectroscopy
inSPIN, Center for Insoluble Protein Structures
Department of Chemistry, University of Aarhus
Langelandsgade 140, DK-8000 Aarhus C, Denmark
Phone: +458942 5528 or +452993 8502 (cell)
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Received on Tue Jun 15 2010 - 07:00:03 PDT
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