I have allready installed AmberTools and tried installing shifts,
realizing exposing that I am certainly not an Linux expert, my
question is why "nab" was not recognized as a command, and wondering
if I did something wrong in the AmberTools installation.
Best,
Jakob
Citing Jason Swails <jason.swails.gmail.com>:
> This email is incredibly vague. Have you even installed AmberTools? The
> source code (for version 1.4) is available on ambermd.org, and . The PATH
> variable is a list of directories that are searched for any command that's
> typed. Obtaining a basic working knowledge of Unix and the command-line
> will help greatly here, so I suggest employing google to find some general
> tutorial. For instance, here http://www.ee.surrey.ac.uk/Teaching/Unix/.
>
> Good luck!
> Jason
>
> On Tue, Jun 15, 2010 at 7:19 AM, Jakob Toudahl Nielsen <jtn.chem.au.dk>wrote:
>
>> Dear Amber users,
>>
>> I am trying to install SHIFTS, and need NAB for the execution. When I
>> try to use shifts it seems that nab is not recognized as a command and
>> that I need to set some path? Here is my output:
>>
>> [jtn.fe2 shifts-4.3]$ make install
>> mkdir bin
>> cd src; make install
>> make[1]: Entering directory `/home/jtn/shiftS/shifts-4.3/src'
>> nab -c shifts_emp.nab
>> make[1]: nab: Command not found
>> make[1]: *** [shifts_emp.o] Error 127
>> make[1]: Leaving directory `/home/jtn/shiftS/shifts-4.3/src'
>> make: *** [install] Error 2
>>
>> any help would be much appreciated.
>> best regards,
>> Jakob
>>
>>
>> --
>> Jakob Toudahl Nielsen, post doc
>> Laboratory for Biomolecular NMR Spectroscopy
>> inSPIN, Center for Insoluble Protein Structures
>> Department of Chemistry, University of Aarhus
>> Langelandsgade 140, DK-8000 Aarhus C, Denmark
>> Phone: +458942 5528 or +452993 8502 (cell)
>>
>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
>>
>
>
>
> --
> Jason M. Swails
> Quantum Theory Project,
> University of Florida
> Ph.D. Graduate Student
> 352-392-4032
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Jakob Toudahl Nielsen, post doc
Laboratory for Biomolecular NMR Spectroscopy
inSPIN, Center for Insoluble Protein Structures
Department of Chemistry, University of Aarhus
Langelandsgade 140, DK-8000 Aarhus C, Denmark
Phone: +458942 5528 or +452993 8502 (cell)
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Received on Tue Jun 15 2010 - 06:30:05 PDT
