Re: [AMBER] Conserving water bridges? need help...

From: Bill Ross <ross.cgl.ucsf.EDU>
Date: Mon, 14 Jun 2010 09:35:51 -0700

> In my studies
> the water bridges are of vital importance and as the run goes on the
> bridges tend to diminish.

Assuming you have used iwrap=1 or imaged with ptraj, the water
bridges really are being lost. In this case you could view it as
a problem with the force field and 'make it right' by identifying
the waters you want to keep and applying distance restraints to
keep them in place.


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Received on Mon Jun 14 2010 - 10:00:04 PDT
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