Re: [AMBER] about sybylmol2 file

From: case <>
Date: Sat, 12 Jun 2010 08:31:15 -0400

On Sat, Jun 12, 2010, Navanath Kumbhar wrote:
> I have downloaded forcefield parameter files for modified nucleosides from
> amberweb sites and used in xleap and opened my mod.pdb input files.
> loadamberprep WBG.prepin
> loadamberparams WBG.frcmod
> mod=loadpdb mod.pdb
> it gives dotts in place of atoms(means not shows bond).

I don't recognize this symptom. Please report the exact messages. Be sure
the atom and residue names in the mod.pdb file exactly match those in the
WBG.prepin file.


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Received on Sat Jun 12 2010 - 06:00:04 PDT
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