On Thu, Jun 10, 2010, Sidney Elmer wrote:
>
> I noticed that there are database files for ff10 in Amber 11, but I couldn't
> find any documentation anywhere for it. Could someone please give a brief
> summary of the virtues of ff10 and what the important changes are? Also, is
> it a pair-wise force field or polarizable force field? Other details?
The "ff10" files currently implement the ff99SB protein force field and the
ff99bsc0 force field for DNA/RNA. They use atom and residue names from
version 3 of the pdb.
The only reason they are there is that some nucleic acid routines in NAB
need the atom and residue names to match those of PDB version 3; hence ff10
is called internally by some NAB routines. General users should not use
these directly, and they may change with future releases.
...dac
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Received on Thu Jun 10 2010 - 18:30:08 PDT
