Hi Gustaf,
Thanks for your reply.
FYI, I didn't change anything....
Thanks and regards,
colvin
On Thu, Jun 10, 2010 at 4:18 PM, Gustaf Olsson <gustaf.olsson.lnu.se> wrote:
> Hi Colvin
>
> Have you modified your source code in any way?
>
> I'm no computer wizard but it seems that there is something
> wrong/missing/added in some files.
>
> Best regards
> Gustaf
>
> On Jun 10, 2010, at 9:43 AM, colvin wrote:
>
> > Dear all,
> >
> > Good day.
> >
> > I have been trying to compile and install *ambertools1.2* for *amber10*,
> > following the instructions in the manual, but i am getting these error
> > messages (showing only the last part of the message):
> >
> > ./nab -c bdna.nab
> > ./nab -c dg_helix.nab
> > ./nab -c getchivol.nab
> > ./nab -c getres.nab
> > ./nab -c getseq_from_pdb.nab
> > ./nab -c getxyz_from_pdb.nab
> > ./nab -c -DBINDIR='"/usr/local/amber10/bin"'
> > -DDATDIR='"/usr/local/amber10/dat"' getpdb_prm.nab
> > ./nab -c getpdb_rlb.nab
> > ./nab -c linkprot.nab
> > ./nab -c link_na.nab
> > ./nab -c -DDATDIR='"/usr/local/amber10/dat"' na_anal.nab
> > na_anal.c:2417:41: warning: missing terminating " character
> > na_anal.c: In function helixanal:
> > na_anal.c:2417: error: expected ) before is
> > na_anal.c:2417: error: stray \ in program
> > na_anal.c:2417:40: warning: missing terminating " character
> > na_anal.c:2417: error: missing terminating " character
> > na_anal.c:2419: error: expected ; before } token
> > cc failed!
> > make[1]: *** [na_anal.o] Error 1
> > make[1]: Leaving directory `/usr/local/amber10/src/nab'
> > make: *** [install] Error 2
> >
> >
> >
> > i then cd ../test and type make -f Makefile_at test, these messages
> > appeared:
> >
> > ( cd nab; make test )
> > make[1]: Entering directory `/usr/local/amber10/test/nab'
> > =====================================================
> > Running test to make dna duplex:
> >
> > /bin/sh: /usr/local/amber10/bin/nab: No such file or directory
> > /bin/sh: line 1: ./duplex: No such file or directory
> > make[1]: *** [duplex_test] Error 127
> > make[1]: Leaving directory `/usr/local/amber10/test/nab'
> > make: *** [test.nab] Error 2
> >
> >
> >
> > This is my *config.h* file:
> >
> > Setting AMBERHOME to /usr/local/amber10
> >
> >
> > Testing the C compiler:
> > gcc -m64 -o testp testp.c
> > OK
> >
> > Obtaining the C++ compiler version:
> > g++ -v
> > The version is 4.4.3
> > OK
> >
> > Testing the g77 compiler:
> > g77 -O2 -fno-automatic -finit-local-zero -o testp testp.f
> > OK
> >
> > Testing flex:
> > OK
> >
> > Configuring netcdf; (may be time-consuming)
> >
> > NETCDF configure succeeded.
> >
> > The configuration file, config.h, was successfully created.
> >
> > The next step is to type 'make -f Makefile_at'
> >
> >
> >
> > gcc version: *gcc (GCC) 4.4.3 *20100127 (Red Hat 4.4.3-4)
> > system information: *Fedora12, Intel Xeon 64 bits*
> >
> >
> > I need help and advice here. Thanks in advance for your time.
> >
> > Thanks again.
> >
> > Regards,
> > colvin
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu Jun 10 2010 - 01:30:05 PDT
