Hi Colvin
Have you modified your source code in any way?
I'm no computer wizard but it seems that there is something wrong/missing/added in some files.
Best regards
Gustaf
On Jun 10, 2010, at 9:43 AM, colvin wrote:
> Dear all,
>
> Good day.
>
> I have been trying to compile and install *ambertools1.2* for *amber10*,
> following the instructions in the manual, but i am getting these error
> messages (showing only the last part of the message):
>
> ./nab -c bdna.nab
> ./nab -c dg_helix.nab
> ./nab -c getchivol.nab
> ./nab -c getres.nab
> ./nab -c getseq_from_pdb.nab
> ./nab -c getxyz_from_pdb.nab
> ./nab -c -DBINDIR='"/usr/local/amber10/bin"'
> -DDATDIR='"/usr/local/amber10/dat"' getpdb_prm.nab
> ./nab -c getpdb_rlb.nab
> ./nab -c linkprot.nab
> ./nab -c link_na.nab
> ./nab -c -DDATDIR='"/usr/local/amber10/dat"' na_anal.nab
> na_anal.c:2417:41: warning: missing terminating " character
> na_anal.c: In function helixanal:
> na_anal.c:2417: error: expected ) before is
> na_anal.c:2417: error: stray \ in program
> na_anal.c:2417:40: warning: missing terminating " character
> na_anal.c:2417: error: missing terminating " character
> na_anal.c:2419: error: expected ; before } token
> cc failed!
> make[1]: *** [na_anal.o] Error 1
> make[1]: Leaving directory `/usr/local/amber10/src/nab'
> make: *** [install] Error 2
>
>
>
> i then cd ../test and type make -f Makefile_at test, these messages
> appeared:
>
> ( cd nab; make test )
> make[1]: Entering directory `/usr/local/amber10/test/nab'
> =====================================================
> Running test to make dna duplex:
>
> /bin/sh: /usr/local/amber10/bin/nab: No such file or directory
> /bin/sh: line 1: ./duplex: No such file or directory
> make[1]: *** [duplex_test] Error 127
> make[1]: Leaving directory `/usr/local/amber10/test/nab'
> make: *** [test.nab] Error 2
>
>
>
> This is my *config.h* file:
>
> Setting AMBERHOME to /usr/local/amber10
>
>
> Testing the C compiler:
> gcc -m64 -o testp testp.c
> OK
>
> Obtaining the C++ compiler version:
> g++ -v
> The version is 4.4.3
> OK
>
> Testing the g77 compiler:
> g77 -O2 -fno-automatic -finit-local-zero -o testp testp.f
> OK
>
> Testing flex:
> OK
>
> Configuring netcdf; (may be time-consuming)
>
> NETCDF configure succeeded.
>
> The configuration file, config.h, was successfully created.
>
> The next step is to type 'make -f Makefile_at'
>
>
>
> gcc version: *gcc (GCC) 4.4.3 *20100127 (Red Hat 4.4.3-4)
> system information: *Fedora12, Intel Xeon 64 bits*
>
>
> I need help and advice here. Thanks in advance for your time.
>
> Thanks again.
>
> Regards,
> colvin
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Received on Thu Jun 10 2010 - 01:30:03 PDT
