Re: [AMBER] how to cut phosphodiester bond

From: Sangita Kachhap <sangita.imtech.res.in>
Date: Wed, 9 Jun 2010 14:43:49 +0530 (IST)

Thank you so much using your suggestion for command to deletebond I have cut the
phosphodiester bond.


> On Tue, Jun 08, 2010, Sangita Kachhap wrote:
>
>> deleteBond .R<DC 4>.A<O3' 9> .R<DC 5>.A<P 1>
>
> This is nowhere near the correct syntax. Atoms must be defined as
> unitname.residuenumber.atomname, with no spaces. You command above is
> split on white space, and looks to leap like you have six arguments, not two:
>
>> deleteBond: Improper number of arguments!
>
> See section 3.4.9 of the Users' Manual for an example of the proper syntax.
>
> ....dac
>
>
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>


Sangita Kachhap
JRF
BIC,IMTECH
CHANDIGARH

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Received on Wed Jun 09 2010 - 02:30:08 PDT
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