Of course, you're right, I did not have permission since I tried on the
cluster. Sorry! Thanks a lot for quick answer!!!!
Cristina
Jason Swails wrote:
> On Thu, Jun 3, 2010 at 12:04 PM, Cristina Sisu <csds2.cam.ac.uk> wrote:
>
>
>> Hello Amber Users,
>>
>> I am trying to do some conformational sampling using LMOD from NAB in
>> AmberTools. I've installed it but when I try to the example in the
>> lmod_beta_secretase:
>>
>>> nab 1W50_lmod.nab
>>>
>> I get the following error:
>>
>>> can't open c-code file 1W50_lmod.c
>>>
>
> >From my (limited) experience with nab, it creates an intermediate .c file
> that is compiled by whatever c-compiler you built nab with. The way I
> interpret this line (and I was able to reproduce this message on my own
> machine), is that you don't have write permission in whatever directory
> you're trying to build this program in. Either move it to a directory where
> you are allowed to write files or give yourself write permission in whatever
> directory you're attempting it with. Also be aware that this command will
> build the program as "a.out". You can use "nab -o 1W50_lmod 1W50_lmod.nab"
> to name it.
>
> Good luck!
> Jason
>
>
>
>>> nab2c failed!
>>>
>> Any ideas as to what is happening?
>> Looking froward to your replies.
>>
>>
>> Thank you,
>> Cristina
>>
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>> http://lists.ambermd.org/mailman/listinfo/amber
>>
>>
>
>
>
>
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Received on Thu Jun 03 2010 - 09:30:09 PDT
