Hi Bob,
You do need to check your Cygwin installation. looks like something is
missing there, and you are having trouble with the most basic
commands. Maybe something got corrupted?
Just so you know, I can install and test AT 1.4 in cygwin with no
problems, but with some test failures:
Finished test suite for AmberTools at Tue Jun 1 17:53:09 ESAST 2010.
305 file comparisons passed
13 file comparisons failed
0 tests experienced errors
The test failures are mostly roundoff differences, apart from 2 sleap
segfaults in:
$AMBERHOME/AmberTools/test/sleap/pdbent/Run.pdbent2
$AMBERHOME/AmberTools/test/sleap/amoeba/Run.amoeba_sol
Cheers,
Gustavo Seabra
Professor Adjunto
Departamento de Química Fundamental
Universidade Federal de Pernambuco
Fone: +55-81-2126-7417
On Mon, May 31, 2010 at 11:31 AM, Hopkins, Robert <hopkins.uhcl.edu> wrote:
> Amber Users and Developers,
>
> I'm using a Cygwin environment on a Windows machine and have (apparently) configured and installed AmberTools-1.4 in serial, successfully. However, when I tried to run the serial tests, I got the messages below:
>
> /usr/bin/tee: line 1: usage:: command not found
>
> /usr/bin/tee: line 3: This: command not found
>
> /usr/bin/tee: line 5: Options:: command not found
>
> /usr/bin/tee: line 6: unexpected EOF while looking for matching `''
>
> /usr/bin/tee: line 10: syntax error: unexpected end of file
>
> grep: logs/test_at_serial/2010-05-31_08-31-05.log: No such file or directory
>
> grep: logs/test_at_serial/2010-05-31_08-31-05.log: No such file or directory
>
> grep: logs/test_at_serial/2010-05-31_08-31-05.log: No such file or directory
>
> /usr/bin/tee: line 1: usage:: command not found
>
> /usr/bin/tee: line 3: This: command not found
>
> /usr/bin/tee: line 5: Options:: command not found
>
> /usr/bin/tee: line 6: unexpected EOF while looking for matching `''
>
> /usr/bin/tee: line 10: syntax error: unexpected end of file
>
> /usr/bin/tee: line 1: usage:: command not found
>
> /usr/bin/tee: line 3: This: command not found
>
> /usr/bin/tee: line 5: Options:: command not found
>
> /usr/bin/tee: line 6: unexpected EOF while looking for matching `''
>
> /usr/bin/tee: line 10: syntax error: unexpected end of file
>
> /usr/bin/tee: line 1: usage:: command not found
>
> /usr/bin/tee: line 3: This: command not found
>
> /usr/bin/tee: line 5: Options:: command not found
>
> /usr/bin/tee: line 6: unexpected EOF while looking for matching `''
>
> /usr/bin/tee: line 10: syntax error: unexpected end of file
>
> Test log file saved as logs/test_at_serial/2010-05-31_08-31-05.log
>
> No test diffs to save!
>
> After rebooting and trying again with the same result, I found no reference to such behavior in the Archives. I've checked that both 'tee' and 'sh' are in /usr/bin (they are). I'd greatly appreciate any suggestions or comments.
>
> Thanks!
>
> Bob Hopkins
>
>
>
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>
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Received on Wed Jun 02 2010 - 06:00:25 PDT
