Re: [AMBER] Prepare the mutants file for ala scanning

From: Gustavo Seabra <>
Date: Tue, 1 Jun 2010 06:59:43 -0300


I'm not sure, but maybe LEaP's "LoadPDBUsingSeq" can do what you want.


On Monday, May 31, 2010, Rilei Yu <> wrote:
> Dear amber users,
> I used manually edit the native pdb file to obtain the prmtop files of the mutants. For example, I usually deleted the side chain of the native residues. That is a bit of time consuming, especially, when you try to do ala scanning on big system. Can anyone here give me more convenient way to do this job? Or the program can do it automatically?
> Very thanks!
> Rilei Yu
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Gustavo Seabra
Professor Adjunto
Departamento de Química Fundamental
Universidade Federal de Pernambuco
Fone: +55-81-2126-7417
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Received on Tue Jun 01 2010 - 03:30:04 PDT
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