Hi Andrew,
Just to follow up on this it turns out that there was a typo in one of the
bugfixes (31 I think) in the bugfix.all file. This would have affected all
PMEMD compiles not just the cuda patched version. The webpage should now be
updated in which case I believe the cuda patch should now work (assuming you
still remove bugfix.26 from it).
Let me know if you have any problems.
All the best
Ross
> -----Original Message-----
> From: amber-bounces.ambermd.org [mailto:amber-bounces.ambermd.org] On
> Behalf Of Ross Walker
> Sent: Monday, April 12, 2010 2:58 PM
> To: 'AMBER Mailing List'
> Subject: RE: [AMBER] Amber10 Cuda compile failure
>
> Hi Andrew,
>
> > Attempting to compile Amber10 for GPU use.
> >
> > As per Amber Developers site, I remove bugfix 26 from bugfix.all, and
> > apply the patch. I get a few patch failures.
> >
> > Ignoring the previous patch failures, I then I apply the nvidia patch
> > with:
> > patch -p0 < amber10_nvidia_cude_support_v0.1.patch
> > which is completely successful.
> >
> > However "make" tells me:
> >
> > prmtop_dat.f90:1131.2:
> >
> > glb_natex(:) = 0
> > 1
> > Error: Unclassifiable statement at (1)
> >
> > Any ideas?
>
> Unfortunately I have not had time to update the patch to be compatible
> with
> bugfix.26 and thus you can only use a bugfix.all up to bugfix.25. I
> have
> been focusing on finishing things for AMBER 11 which is why this was
> not
> done. It will also soon be replaced by the AMBER 11 version which will
> include both GB and PME support.
>
> In the meantime please untar a brand new AMBER 10 tree and apply the
> attached bugfix files and try compiling again.
>
> All the best
> Ross
>
> /\
> \/
> |\oss Walker
>
> | Assistant Research Professor |
> | San Diego Supercomputer Center |
> | Tel: +1 858 822 0854 | EMail:- ross.rosswalker.co.uk |
> | http://www.rosswalker.co.uk | http://www.wmd-lab.org/ |
>
> Note: Electronic Mail is not secure, has no guarantee of delivery, may
> not
> be read every day, and should not be used for urgent or sensitive
> issues.
>
>
>
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Received on Tue Apr 13 2010 - 09:00:07 PDT
