Re: [AMBER] FW: Problem reading PDB residues in AmberTools-1.3

From: case <case.biomaps.rutgers.edu>
Date: Fri, 5 Feb 2010 13:44:41 -0500

On Fri, Feb 05, 2010, Hopkins, Robert wrote:
>
> I just realized I should have also sent the PDB file with the e-mail below.

But the original post has already been replied to:

   http://archive.ambermd.org/201002/0080.html

Did that not help?....dac

> I'm using AmberTools-1.3 in a Cygwin environment. After I created
> several PDB files in ptraj, I then loaded each of them into xleap for
> further processing. The leap.log in each case indicates that *none* of
> the residues (e.g., DC5, DG, Na+, WAT, etc.) was recognized by xleap (or
> by tleap when I tried that), yet the functioning of either leap program
> appeared to be fine otherwise. An example leap.log file is attached.
> Any suggestions would be greatly appreciated!

_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Fri Feb 05 2010 - 11:00:02 PST
Custom Search