Dear Lachele,
Thank you so much for the information.
Best
Siddharth
On Mon, Feb 1, 2010 at 8:34 AM, Lachele Foley (Lists) <lf.list.gmail.com>wrote:
> Simulation methods for glycoproteins are discussed in Section 3.5.3 of
> the AmberTools 1.3 manual. The discussion there is fairly detailed.
> You should also see the rest of section 3.5 as well as section 2.8.
> That documentation is as close to a tutorial as we have.
>
> We do have an online builder that can work for many glycoproteins.
> The site is pretty easy to use. We've been upgrading it recently,
> though, so please send an email to glycan.gmail.com if you have
> trouble.
>
> Online glycopritein builder: http://glycam.ccrc.uga.edu/ccrc/gp/
>
> :-) Lachele
>
>
> On Sun, Jan 31, 2010 at 6:08 PM, Siddharth Rastogi
> <siddharthrastogi08.gmail.com> wrote:
> > Dear AMBER users,
> >
> > I am going to simulate a glycoprotein.
> > Is there any tutorial for this type of simulation in AMBER.
> > Please let me know about it.
> >
> > Thank you for your suggestions.
> >
> > --
> > Siddharth Rastogi
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
>
>
>
> --
> :-) Lachele
> Lachele Foley
> CCRC/UGA
> Athens, GA USA
>
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>
--
Siddharth Rastogi
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Received on Tue Feb 02 2010 - 17:00:02 PST
