You can use antechamber and parmchk, though these are not applicable
to every custom ligand.
There is a tutorial located at
http://ambermd.org/tutorials/basic/tutorial4/ that explains how the
process is done. The tutorials here have a large number of common
tasks explained in a step-by-step fashion.
Good luck!
Jason
On Mon, Jan 18, 2010 at 12:47 PM, Christine Baranski
<chbaranski.googlemail.com> wrote:
> Dear All,
>
> Have a nice day, I am looking for protocol or method for parametrization of
> a new ligand. Is there any way I can parametrize it without the use of
> Gaussian?
>
>
> Regards
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
---------------------------------------
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Graduate Student
352-392-4032
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Mon Jan 18 2010 - 10:00:03 PST
