[AMBER] plz help

From: YOGESH NARKHEDE <yogesh.pi.niper.gmail.com>
Date: Mon, 18 Jan 2010 09:50:15 +0530

i'm trying to perform mm-pbsa calacualtion of docking of a ligand into my
protein.The protein contains prosthetic group in form of Mg2+ ions and the
ligand contains phosphorous.now can any one please tell me how to define
parameters for these non standrad atom in ff03 amber field. b'coz in amber
tools 1.3 it is giving an error.saaying error:atom non parameterized 
-- 
YOGESH B.NARKHEDE
Research Scholar,Dept of Pharmacoinformatics,
National Institute Of Pharmaceutical Education and Research
sec-67/A,Mohali,
Punjab-160062,
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Received on Sun Jan 17 2010 - 20:30:03 PST
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